SNP Profiles of SPEC 54 /1 View Data

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_Input profile	TT	CC	AA	TT	CC	GG	AA	CC	AA	TT	GG	GG	AA	CC
1._SPEC_54_/1	_	_	AA	TT	CC	_	AA	CC	AA	TT	_	_	AA	_
2._SPEC_54_/1	_	_	AA	TT	CC	_	AA	CC	AA	TT	_	_	AA	_
3._SPEC_54_/1	_	_	AA	TT	CC	_	AA	CC	AA	TT	_	_	AA	_
4._SPEC_54_/1	_	_	AA	TT	CC	_	AA	CC	AA	TT	_	_	AA	_
5._SPEC_54_/1	_	_	AA	TT	CC	_	AA	CC	AA	TT	_	_	AA	_
6._SPEC_54_/1	_	_	AA	TT	CC	_	AA	CC	AA	TT	_	_	AA	_
7._SPEC_54_/1	_	_	AA	TT	CC	_	AA	CC	AA	TT	_	_	AA	_
8._SPEC_54_/1	_	_	AA	TT	CC	_	AA	CC	AA	TT	_	_	AA	_
9._SPEC_54_/1	_	_	AA	TT	CC	_	AA	CC	AA	TT	_	_	AA	_
10._SPEC_54_/1	_	_	AA	TT	CT	_	AA	CC	AA	TT	_	_	AA	_
11._GC-05-162-4-15	TT	CC	AA	TT	CC	GG	AA	CC	AA	TT	GG	GG	AA	CC
12._GC-05-162-4-15	TT	CC	AA	TT	CC	GG	AA	CC	AA	TT	GG	GG	AA	CC
13._GC-05-162-4-15	TT	CC	AA	TT	CC	GG	AA	CC	AA	TT	GG	GG	AA	CC
14._GC-05-063-2-14	TT	CC	AA	TT	CC	GG	AA	CC	AA	TT	GG	GG	AA	CC
15._GC-05-063-2-14	TT	CC	AA	TT	CC	GG	AA	CC	AA	TT	GG	GG	AA	CC
16._GC-05-162-4-15	TT	CC	AA	TT	CC	GG	AA	CC	AA	TT	GG	GG	AA	CC
17._GC-05-063-2-14	TT	CC	AA	TT	CC	GG	AA	CC	AA	TT	GG	GG	AA	CC
18._GC-05-162-4-15	TT	CC	AA	TT	CC	GG	AA	CC	AA	TT	GG	GG	AA	CC
19._GC-05-063-2-14	TT	CC	AA	TT	CC	GG	AA	CC	AA	TT	GG	GG	AA	CC
20._RUQ_50	_	_	AA	_	_	_	_	_	AA	_	GG	_	_	_
21._GC-05-063-2-14	TT	CC	AA	TT	CT	GG	AA	CC	AA	TT	GG	GG	AA	CC
22._RUQ_50	_	_	AA	GT	CC	_	AA	CC	AA	TT	_	_	AA	_

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	CC	TT	TT	GG	AA	CC	CC	TT	GG	GG	TT	AA	GG
1._SPEC_54_/1	AA	CC	TT	TT	GG	AA	_	CC	_	GG	_	_	_	GG
2._SPEC_54_/1	AA	CC	TT	TT	GG	AA	_	CC	_	GG	_	_	_	GG
3._SPEC_54_/1	AA	CC	TT	TT	GG	AA	_	CC	_	GG	_	_	_	GG
4._SPEC_54_/1	AA	CC	TT	TT	GG	AA	_	CC	_	GG	_	_	_	GG
5._SPEC_54_/1	AA	CC	TT	TT	GG	AA	_	CC	_	GG	_	_	_	GG
6._SPEC_54_/1	AA	CC	TT	TT	GG	AA	_	CC	_	GG	_	_	_	GG
7._SPEC_54_/1	AA	CC	TT	TT	GG	AA	_	CC	_	GG	_	_	_	GG
8._SPEC_54_/1	AA	CC	TT	TT	GG	AA	_	CC	_	GG	_	_	_	GG
9._SPEC_54_/1	AA	CC	_	TT	GG	AA	_	CC	_	GG	_	_	_	GG
10._SPEC_54_/1	AA	CC	TT	TT	GG	AA	_	CC	_	GG	_	_	_	GG
11._GC-05-162-4-15	AA	CC	TT	TT	GG	AA	CC	CC	CC	GG	GG	TT	AA	GG
12._GC-05-162-4-15	AA	CC	TT	TT	GG	AA	CC	CC	CC	GG	GG	TT	AA	GG
13._GC-05-162-4-15	AA	CC	TT	TT	GG	AA	CC	CC	CC	GG	GG	TT	AA	GG
14._GC-05-063-2-14	AA	CC	TT	TT	GG	AA	CC	CC	CC	GG	GG	TT	AA	GG
15._GC-05-063-2-14	AA	CC	TT	TT	GG	AA	CC	CC	CC	GG	GG	TT	AA	GG
16._GC-05-162-4-15	AA	CC	TT	TT	GG	AA	CC	CC	CC	GG	GG	TT	AA	GG
17._GC-05-063-2-14	AA	CC	TT	TT	GG	AA	CC	CC	CC	GG	GG	TT	AA	GG
18._GC-05-162-4-15	AA	CC	TT	TT	GG	AA	CC	CC	CC	GG	GG	TT	AA	GG
19._GC-05-063-2-14	AA	CC	_	TT	GG	AA	CC	CC	CC	GG	GG	TT	AA	GG
20._RUQ_50	_	AC	_	_	GG	AA	CC	_	TT	GG	GG	_	AA	GG
21._GC-05-063-2-14	AA	CC	TT	TT	GG	AA	CC	CC	CC	GG	GG	TT	AA	GG
22._RUQ_50	AA	CC	TT	TT	GG	AA	_	CC	_	GG	_	_	_	GG

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CC	CC	GG	AA	CC	CC	GG	AA	TT	TT	TT	TT	CT	CC
1._SPEC_54_/1	_	CC	_	AA	_	CC	_	_	_	TT	_	_	CT	CC
2._SPEC_54_/1	_	CC	_	AA	_	CC	_	_	_	TT	_	_	CT	CC
3._SPEC_54_/1	_	CC	_	AA	_	CC	_	_	_	TT	_	_	CT	CC
4._SPEC_54_/1	_	CC	_	AA	_	CC	_	_	_	TT	_	_	CT	CC
5._SPEC_54_/1	_	CC	_	AA	_	CC	_	_	_	TT	_	_	CT	CC
6._SPEC_54_/1	_	CC	_	AA	_	CC	_	_	_	TT	_	_	CT	CC
7._SPEC_54_/1	_	CC	_	AA	_	CC	_	_	_	TT	_	_	CT	CC
8._SPEC_54_/1	_	CC	_	AA	_	CC	_	_	_	TT	_	_	CT	CC
9._SPEC_54_/1	_	CC	_	AA	_	CC	_	_	_	TT	_	_	CT	CC
10._SPEC_54_/1	_	CC	_	AA	_	CC	_	_	_	TT	_	_	CT	CC
11._GC-05-162-4-15	CC	CC	GG	AA	CC	CC	GG	AA	TT	TT	TT	TT	CT	CC
12._GC-05-162-4-15	CC	CC	GG	AA	CC	CC	GG	AA	TT	TT	TT	TT	CT	CC
13._GC-05-162-4-15	CC	CC	GG	AA	CC	CC	GG	AA	TT	TT	TT	TT	CT	CC
14._GC-05-063-2-14	CC	CC	GG	AA	CC	CC	GG	AA	TT	TT	TT	TT	CT	CC
15._GC-05-063-2-14	CC	CC	GG	AA	CC	CC	GG	AA	TT	TT	TT	TT	CT	CC
16._GC-05-162-4-15	CC	CC	GG	AA	CC	CC	GG	AA	TT	TT	TT	TT	CT	CC
17._GC-05-063-2-14	CC	CC	_	AA	CC	CC	GG	AA	TT	TT	TT	TT	CT	CC
18._GC-05-162-4-15	CC	CC	_	AA	CC	CC	GG	AA	TT	TT	TT	TT	CT	CC
19._GC-05-063-2-14	CC	CC	GG	AA	CC	CC	GG	AA	_	TT	TT	TT	CT	CC
20._RUQ_50	_	_	GG	AA	CC	_	_	_	_	TT	_	_	_	CC
21._GC-05-063-2-14	CC	CC	GG	AA	CC	CC	GG	AA	TT	TT	TT	TT	CT	CC
22._RUQ_50	_	CC	_	AA	_	CC	_	_	_	TT	_	_	CT	CC

	43
_Input profile	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._SPEC_54_/1	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._SPEC_54_/1	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._SPEC_54_/1	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._SPEC_54_/1	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._SPEC_54_/1	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._SPEC_54_/1	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._SPEC_54_/1	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._SPEC_54_/1	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._SPEC_54_/1	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._SPEC_54_/1	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._GC-05-162-4-15	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._GC-05-162-4-15	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._GC-05-162-4-15	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
14._GC-05-063-2-14	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
15._GC-05-063-2-14	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
16._GC-05-162-4-15	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
17._GC-05-063-2-14	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
18._GC-05-162-4-15	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
19._GC-05-063-2-14	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
20._RUQ_50	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
21._GC-05-063-2-14	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
22._RUQ_50	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: SPEC_54_/1 RUQ_50

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._SPEC_54_/1

identical
24 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5415 4

Dapeng Zhang, 2016

2._SPEC_54_/1

identical
24 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5415 1 > FP

Dapeng Zhang, 2016

3._SPEC_54_/1

identical
24 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5415 5

Dapeng Zhang, 2016

4._SPEC_54_/1

identical
24 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5415 3

Dapeng Zhang, 2016

5._SPEC_54_/1

identical
24 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5415 2

Dapeng Zhang, 2016

6._SPEC_54_/1

identical
24 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5214 4 > FP

Dapeng Zhang, 2016

7._SPEC_54_/1

identical
24 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5214 3 > FP

Dapeng Zhang, 2016

8._SPEC_54_/1

identical
24 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5214 2 > FP

Dapeng Zhang, 2016

9._SPEC_54_/1

identical
23 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5214 1 > FP

Dapeng Zhang, 2016

10._SPEC_54_/1

97.9 %
24 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5214 5

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

11._SPEC_54_/1 GC-05-162-4-15

97.7 %
43 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

12._SPEC_54_/1 GC-05-162-4-15

97.7 %
43 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

13._SPEC_54_/1 GC-05-162-4-15

97.7 %
43 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP3

14._SPEC_54_/1 GC-05-063-2-14

97.7 %
43 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP4

15._SPEC_54_/1 GC-05-063-2-14

97.7 %
43 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP2

16._SPEC_54_/1 GC-05-162-4-15

97.7 %
43 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

17._SPEC_54_/1 GC-05-063-2-14

97.6 %
42 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP1

18._SPEC_54_/1 GC-05-162-4-15

97.6 %
42 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

19._SPEC_54_/1 GC-05-063-2-14

97.6 %
41 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP3

20._SPEC_54_/1 RUQ_50

97.1 %
17 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

21._SPEC_54_/1 GC-05-063-2-14

96.5 %
43 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

22._SPEC_54_/1 RUQ_50

95.8 %
24 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP242
11	TcSNP329	12	TcSNP364	13	TcSNP372	14	TcSNP448	15	TcSNP469
16	TcSNP529	17	TcSNP534	18	TcSNP560	19	TcSNP577	20	TcSNP591
21	TcSNP602	22	TcSNP619	23	TcSNP702	24	TcSNP723	25	TcSNP731
26	TcSNP799	27	TcSNP823	28	TcSNP872	29	TcSNP878	30	TcSNP891
31	TcSNP899	32	TcSNP998	33	TcSNP999	34	TcSNP1060	35	TcSNP1063
36	TcSNP1111	37	TcSNP1126	38	TcSNP1253	39	TcSNP1309	40	TcSNP1439
41	TcSNP1442	42	TcSNP1458	43	TcSNP1484